Available data in KPMP

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Main study data

AKI (n=78)  |  CKD (n=350) |  DM-R (n=29)

Protocol:
Data category
ButtonButton
Clinical
Document/data type
Access
Link to document or Atlas Repository
Codebook:
Data dictionary:
Clinical data
Open
Clinical data
Controlled
Pathology
Experimental strategy
Access
Link to document or Atlas Repository
Electron microscopy
Controlled
Available with DUA request
Immunofluorescence
Controlled
Available with DUA request
Light microscopy
Open
Pathology descriptor scoring
Open
Spatial segmentation data
Open
Molecular
Experimental strategy
Access
Link to document or Atlas Repository
Data type: Transcriptomics
10X Genomics multiome:
snRNA-seq & snATAC-seq
Open
Controlled
Bulk total/mRNA
Open
Controlled
Regional Transcriptomics
Open
Controlled
Single-cell RNA-seq
Open
Controlled
Single-nucleus ATAC-seq
Open
Controlled
Single-nucleus RNA-seq
Open
Controlled
Spatial transcriptomics
Open
Controlled
Data type: Proteomics
Multimodal Imaging Mass Spectrometry
Open
Regional proteomics
Open
Data type: Metabolomics
Spatial metabolomics
Open
Also available in METASPACE
Spatial lipidomics
Open
Also available in METASPACE
Spatial N-glycomics
Open
Also available in METASPACE
Data type: Imaging
3D imaging & cytometry
Open
CODEX
Open
Imaging Mass Cytometry
Open
Data type: Epigenetics
CUT&RUN
Open
Controlled
DNA methyl-seq
Open
Controlled
Biomarker
Experimental strategy
Access
Link to document or Atlas Repository
Plasma & urine
Open
Stool microbiome
Open
Controlled

KPMP biomarkers: Healthy Reference (n=18) | AKI/CKD/DM-R (n=119)

Clinical
Document/data type
Access
Link to document or Atlas Repository
Data dictionary:
Clinical data
Open
Clinical data
Controlled
Biomarker
Experimental strategy
Access
Link to document or Atlas Repository
Plasma & urine
Open
Stool microbiome
Open
Controlled
Available with limited DUA request

Ancillary study data

This ancillary study includes participants enrolled outside of the KPMP protocol(s)

Healthy Reference (n=125, study concluded 6-30-2023)

KPMP HRT Site:
Living kidney donors
KPMP HRT Site:
Kidney stone donors
KPMP Pilot 1 nephrectomies
KPMP Pilot1v2 Protocol nephrectomies
Protocol:
Available upon request
Available upon request
Not available
Not available
ButtonButton
Data category
Clinical
Document/data type
Access
KPMP HRT Site:
Living kidney donors
KPMP HRT Site:
Kidney stone donors
KPMP Pilot 1 nephrectomies
KPMP Pilot1v2 Protocol nephrectomies
Codebook:
Not available
Not available
Data dictionary:
Not available
Not available
Not available
Not available
Clinical data
Open
Clinical study data
Controlled
Not available
Not available
Pathology
Experimental strategy
Access
KPMP HRT Site:
Living kidney donors
KPMP HRT Site:
Kidney stone donors
KPMP Pilot 1 nephrectomies
KPMP Pilot1v2 Protocol nephrectomies
Electron microscopy
Not available
Not available
Not available
Not available
Immunofluorescence
Not available
Not available
Not available
Not available
Light microscopy
Open
Not available
Molecular
Experimental strategy
Access
KPMP HRT Site:
Living kidney donors
KPMP HRT Site:
Kidney stone donors
KPMP Pilot 1 nephrectomies
KPMP Pilot1v2 Protocol nephrectomies
Data type: Transcriptomics
10X Genomics multiome:
snRNA-seq & snATAC-seq
Open
Data not yet generated
Data not yet generated
Expression matrices (h5, tsv, mtx), experimental metadata
Controlled
Data not yet generated
Data not yet generated
Bulk total/mRNA
Open
Not available
Not available
Not available
Not available
Controlled
Not available
Not available
Not available
Not available
Regional Transcriptomics
Open
Not available
Not available
Not available
Controlled
Data not yet generated
Data not yet generated
Data not yet generated
Single-cell RNA-seq
Open
Not available
Controlled
Not available
Single-nucleus ATAC-seq
Open
Data not yet generated
Data not yet generated
Controlled
Data not yet generated
Data not yet generated
Single-nucleus RNA-seq
Open
Expression matrices (h5, tsv, mtx), experimental metadata
Controlled
Spatial transcriptomics
Open
Data not yet generated
Not available
Controlled
FASTQ & BAM
Data not yet generated
Not available
Data type: Proteomics
Regional proteomics
Open
Not available
Not available
Not available
Data type: Metabolomics
Spatial metabolomics
Open
Not available
Not available
Spatial lipidomics
Open
Not available
Not available
Spatial N-glycomics
Open
Not available
Not available
Data type: Imaging
3D imaging & cytometry
Open
Data not yet generated
Data not yet generated
Not available
Not available
CODEX
Open
Data not yet generated
Data not yet generated
Not available
Not available
Imaging Mass Cytometry
Open
Data not yet generated
Not available
Not available
Data type: Epigenetics
CUT&RUN
Open
Not available
Not available
Not available
Controlled
Not available
Not available
Not available
DNA methyl-seq
Open
Data not yet generated
Data not yet generated
Controlled
Data not yet generated
Data not yet generated
Biomarker
Experimental strategy
Access
Link to document or Atlas Repository
Plasma & urine
Open

COVID-19 (n=90, study concluded 6-30-2022)

Protocol:
Data category
ButtonButton
Clinical
Document/data type
Access
Link to document or Atlas Repository
Codebook:
Clinical data
Open
Not available
Clinical data
Controlled
Available with DUA request
Blood & urine
Access
Open
Not available
Controlled
Available with an approved ancillary study

Retinal imaging substudy (n=22, study concluded 6-30-2022)

Protocol:
Available on request
Data category
ButtonButton
Clinical
Document/data type
Access
Link to document or Atlas Repository
Codebook:
Clinical data
Open
Not available
Clinical data
Controlled
Available with DUA request
Retinal images
Access
Open
Not available
Controlled
Available with PHI DUA request

fMRI substudy (n=13)

Protocol:
Available on request
Data category
ButtonButton
Clinical
Document/data type
Access
Link to document or Atlas Repository
Codebook:
Clinical data
Open
Not available
Clinical data
Controlled
Available with limited DUA request
fMRI images
Access
Open
Not available
Controlled
Available with limited DUA request

Kidney physiology substudy (n=7)

Protocol:
Available on request
Data category
ButtonButton
Clinical
Document/data type
Access
Link to document or Atlas Repository
Codebook:
Clinical data
Open
Not available
Clinical data
Controlled
Available with limited DUA request